Integrative Plant Nutrition

Explore Species & Nutrients & Omics interactions

Integrative plant nutrition is a research framework that integrates multiple disciplines, methodologies, and scales of analysis to study plant nutrition as a complex, system-level process.

Transcriptomics, metabolomics, and microbiomics analyses jointly cover 30 plant species under 7 nutrient conditions.

30
Total Species
7
Nutrient Types

Built-in Visualization Tools

Transcriptomics

DEG Volcano Plot
Differential gene distribution
OrthoFinder
Cross-species orthogroup comparison
DEG UpSet Plot
Shared and specific nutrient responses
GENIE3 Regulatory Network
Cross-nutrient regulatory interactions

Microbiomics

Relative Abundance Composition
Taxonomic stacked bar plot
Alpha Diversity
Within-sample Shannon diversity
Bray-Curtis PCoA
Between-sample community variation
Differential Taxa
Enriched and depleted taxa lollipop plot

Transcriptomics Analysis

Data Coverage Overview

Species × Nutrient Coverage Matrix


Download DEG

Cross-species & Orthogroup Analysis

Species Pair Shared Orthogroup Matrix

Orthogroup Query

Gene Copy Number Heatmap

Gene-centered Orthogroup Network

Orthogroup
Species
Gene
Download orthogroup genes

Cross-condition (Nutrient) Interaction

Shared DEGs Across Nutrients (Upset Plot)

Download PDF

GENIE3 Gene Regulatory Network

Regulators
Download CSV

Microbiomics Analysis

Data Coverage Overview

Species × Nutrient Coverage Matrix

Dataset Information

Community Composition & Diversity

Relative Abundance Composition
Alpha Diversity (Shannon)
Bray-Curtis PCoA

Differential Taxa


Download Differential Taxa Download Current ASV Table

Metabolomics Analysis

Differential Metabolite Count Summary

Metabolite Class Composition

Select Dataset for Detailed Metabolite Analysis

Differential Metabolite Regulation Summary

Differential Metabolite Table

Database Source Summary

Data sources are organized by omics layer. Use the tabs below to browse each collection.

The sample naming conventions used on this website are as follows: Download the sample naming rules (.xlsx)




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